TIL: You can get a list of Spark-enabled GATK tools with the command
gatk --list | grep Spark
(The website doesn't seem to have a list anywhere)
Anyone have advice on how to get the Spades genome assembler to use less memory?
Published version of CAGEE!
Here, we present a new software package (Computational Analysis of Gene Expression Evolution [CAGEE]) for inferring patterns of increases and decreases in gene expression across a phylogenetic tree, as well as the rate at which these changes occur. CAGEE can calculate genome-wide rates of gene expression, along with ancestral states for each gene.
#phylogenetics #bioinformatics
Just compiling up a version of NCBI Blast for use on a large node. Anyone know why it looks for Boost/LaPack/GSL but doesn't require them? Will it be faster if I make them available?